The Tower content creator Greeny created a great video on the topic of Tower bugs & unknown mechanics, which you can check out here: https://www.youtube.com/watch?v=167sRnibZfU
Several of these bugs and features have been mentioned throughout the Knowledge Hub, but it would likely benefit from having a clear and consolidated list to keep up-to-date on such bugs and unknown and unclear mechanics in the game. And, through further crowdsourcing, discussions and testing, we may be able to further illuminate some of the matters that are currently unclear in the game as well as help more clearly depict the inconsistencies and bugs that a player may not know about.
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Work-in-progress list below.
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Things to be added: